Index

A

add_argument() (autosubmit.autosubmit.MyParser method) add_children() (autosubmit.job.job.Job method) add_edge_info() (autosubmit.job.job.Job method) add_parameters() (autosubmit.platforms.platform.Platform method) add_parent() (autosubmit.job.job.Job method) add_special_conditions() (autosubmit.job.job_list.JobList method) allocated_nodes() (autosubmit.platforms.slurmplatform.SlurmPlatform static method) archive() (autosubmit.autosubmit.Autosubmit static method) assign_unique_fake_id() (autosubmit.job.job_list.JobList method) Autosubmit (class in autosubmit.autosubmit) autosubmit.autosubmit module autosubmit.database.db_common module autosubmit.git.autosubmit_git module autosubmit.job.job module

autosubmit.job.job_common module autosubmit.job.job_list module autosubmit.monitor.monitor module autosubmit.platforms.ecplatform module autosubmit.platforms.locplatform module autosubmit.platforms.pjmplatform module autosubmit.platforms.platform module autosubmit.platforms.slurmplatform module AutosubmitGit (class in autosubmit.git.autosubmit_git)

B

backup_save() (autosubmit.job.job_list.JobList method)

budget (autosubmit.platforms.platform.Platform property)

C

calendar_chunk() (autosubmit.job.job.Job method) calendar_split() (autosubmit.job.job.Job method) cancel_jobs() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.pjmplatform.PJMPlatform method) (autosubmit.platforms.slurmplatform.SlurmPlatform method) CancelAction (class in autosubmit.autosubmit) cat_log() (autosubmit.autosubmit.Autosubmit static method) change_status() (autosubmit.autosubmit.Autosubmit static method) check() (autosubmit.autosubmit.Autosubmit static method) check_all_jobs() (autosubmit.platforms.platform.Platform method) check_and_update_status() (autosubmit.job.job.WrapperJob method) check_checkpoint() (autosubmit.job.job_list.JobList method) check_completed_files() (autosubmit.platforms.locplatform.LocalPlatform method) check_completion() (autosubmit.job.job.Job method) check_compressed_local_logs() (autosubmit.job.job.Job method) check_db() (in module autosubmit.database.db_common) check_deadlock() (autosubmit.autosubmit.Autosubmit static method) check_end_time() (autosubmit.job.job.Job method) check_experiment_exists() (in module autosubmit.database.db_common) check_file_exists() (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.slurmplatform.SlurmPlatform method) check_non_wrapped_jobs() (autosubmit.autosubmit.Autosubmit static method) check_remote_log_dir() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.pjmplatform.PJMPlatform method) (autosubmit.platforms.slurmplatform.SlurmPlatform method) check_remote_permissions() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) check_retrials_end_time() (autosubmit.job.job.Job method) check_retrials_start_time() (autosubmit.job.job.Job method) check_running_after() (autosubmit.job.job.Job method) check_script() (autosubmit.job.job.Job method) check_scripts() (autosubmit.job.job_list.JobList method) check_special_status() (autosubmit.job.job_list.JobList method) check_start_time() (autosubmit.job.job.Job method)

check_started_after() (autosubmit.job.job.Job method) check_unpushed_changes() (in module autosubmit.git.autosubmit_git) check_wrapper_stored_status() (autosubmit.autosubmit.Autosubmit static method) check_wrappers() (autosubmit.autosubmit.Autosubmit static method) checkpoint (autosubmit.job.job.Job property) children (autosubmit.job.job.Job property) children_names_str (autosubmit.job.job.Job property) chunk (autosubmit.job.job.Job property) chunk_size (autosubmit.job.job.Job property) chunk_size_unit (autosubmit.job.job.Job property) clean() (autosubmit.autosubmit.Autosubmit static method) clean_git() (in module autosubmit.git.autosubmit_git) clean_log_recovery_process() (autosubmit.platforms.platform.Platform method) clean_plot() (in module autosubmit.monitor.monitor) clean_stats() (in module autosubmit.monitor.monitor) clear_preview_wrapper() (autosubmit.job.job_list.JobList method) clone_repository() (autosubmit.git.autosubmit_git.AutosubmitGit static method) close_conn() (in module autosubmit.database.db_common) compress_file() (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.platform.Platform method) configure() (autosubmit.autosubmit.Autosubmit static method) confirm_done_jobs_via_stat() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.platform.Platform method) connect() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.platform.Platform method) construct_real_additional_file_name() (autosubmit.job.job.Job method) CopyQueue (class in autosubmit.platforms.platform) cpmip_thresholds (autosubmit.job.job.Job property) create() (autosubmit.autosubmit.Autosubmit static method) create_a_new_copy() (autosubmit.platforms.slurmplatform.SlurmPlatform method) create_db() (in module autosubmit.database.db_common) create_script() (autosubmit.job.job.Job method) create_tree_list() (autosubmit.monitor.monitor.Monitor method) custom_directives (autosubmit.job.job.Job property)

D

database_fix() (autosubmit.autosubmit.Autosubmit static method) DbException delay (autosubmit.job.job.Job property) delay_retrials (autosubmit.job.job.Job property) delete_experiment() (in module autosubmit.database.db_common) delete_file() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.platform.Platform method)

delete_parent() (autosubmit.job.job.Job method) delete_previous_run_files_by_job_names() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.platform.Platform method) delete_previous_stat_files_by_job_names() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.platform.Platform method) dependencies (autosubmit.job.job.Job property) describe() (autosubmit.autosubmit.Autosubmit static method)

E

EcPlatform (class in autosubmit.platforms.ecplatform) environ_init() (autosubmit.autosubmit.Autosubmit static method) error() (autosubmit.autosubmit.MyParser method) exclusivity (autosubmit.platforms.platform.Platform property)

experiment_data (autosubmit.autosubmit.Autosubmit property) expid (autosubmit.job.job_list.JobList property) expid() (autosubmit.autosubmit.Autosubmit static method) export (autosubmit.job.job.Job property)

F

fail_count (autosubmit.job.job.Job property) find_and_delete_redundant_relations() (autosubmit.job.job_list.JobList method)

finish_current_experiment_run() (autosubmit.autosubmit.Autosubmit static method) fix_local_logs_timestamps() (autosubmit.job.job.Job method) frequency (autosubmit.job.job.Job property)

G

generate() (autosubmit.job.job_list.JobList method) generate_as_config() (autosubmit.autosubmit.Autosubmit static method) generate_output() (autosubmit.monitor.monitor.Monitor method) generate_output_stats() (autosubmit.monitor.monitor.Monitor method) generate_output_txt() (autosubmit.monitor.monitor.Monitor method) generate_scripts_andor_wrappers() (autosubmit.autosubmit.Autosubmit static method) get_active() (autosubmit.job.job_list.JobList method) get_all() (autosubmit.job.job_list.JobList method) get_autosubmit_version() (in module autosubmit.database.db_common) get_check_all_jobs_cmd() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.pjmplatform.PJMPlatform method) (autosubmit.platforms.slurmplatform.SlurmPlatform method) get_check_job_cmd() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.pjmplatform.PJMPlatform method) (autosubmit.platforms.slurmplatform.SlurmPlatform method) get_checkpoint_files() (autosubmit.job.job.Job method) (autosubmit.platforms.platform.Platform method) get_chunk_list() (autosubmit.job.job_list.JobList method) get_completed() (autosubmit.job.job_list.JobList method) get_completed_failed_without_logs() (autosubmit.job.job_list.JobList method) get_completed_job_names() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.platform.Platform method) get_connection_url() (in module autosubmit.database.db_common) get_date_list() (autosubmit.job.job_list.JobList method) get_delayed() (autosubmit.job.job_list.JobList method) get_estimated_queue_time_cmd() (autosubmit.platforms.slurmplatform.SlurmPlatform method) get_experiment_expids() (in module autosubmit.database.db_common) get_experiment_id() (in module autosubmit.database.db_common) get_failed() (autosubmit.job.job_list.JobList method) get_file() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.platform.Platform method) get_file_size() (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.platform.Platform method) get_files() (autosubmit.platforms.platform.Platform method) get_files_path() (autosubmit.platforms.platform.Platform method) get_held_jobs() (autosubmit.job.job_list.JobList method) get_historical_database() (autosubmit.autosubmit.Autosubmit static method) get_in_queue() (autosubmit.job.job_list.JobList method) get_in_queue_grouped_id() (autosubmit.job.job_list.JobList method) get_iteration_info() (autosubmit.autosubmit.Autosubmit static method)

get_job_by_name() (autosubmit.job.job_list.JobList method) get_job_energy_cmd() (autosubmit.platforms.slurmplatform.SlurmPlatform method) get_job_id_by_job_name_cmd() (autosubmit.platforms.pjmplatform.PJMPlatform method) (autosubmit.platforms.slurmplatform.SlurmPlatform method) get_job_list() (autosubmit.job.job_list.JobList method) get_job_related() (autosubmit.job.job_list.JobList method) get_jobs_by_section() (autosubmit.job.job_list.JobList method) get_last_retrials() (autosubmit.job.job.Job method) get_logs_files() (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.platform.Platform method) get_member_list() (autosubmit.job.job_list.JobList method) get_metric_folder() (autosubmit.job.job.Job method) get_mkdir_cmd() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.pjmplatform.PJMPlatform method) (autosubmit.platforms.slurmplatform.SlurmPlatform method) get_new_remotelog_name() (autosubmit.job.job.Job method) get_ordered_jobs_by_date_member() (autosubmit.job.job_list.JobList method) get_packages_persistence() (autosubmit.job.job_list.JobList method) get_prepared() (autosubmit.job.job_list.JobList method) get_queuing() (autosubmit.job.job_list.JobList method) get_ready() (autosubmit.job.job_list.JobList method) get_remote_log_dir() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.pjmplatform.PJMPlatform method) (autosubmit.platforms.platform.Platform method) (autosubmit.platforms.slurmplatform.SlurmPlatform method) get_running() (autosubmit.job.job_list.JobList method) get_ssh_output() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) get_submitted() (autosubmit.job.job_list.JobList method) get_submitted_job_id() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.pjmplatform.PJMPlatform method) (autosubmit.platforms.slurmplatform.SlurmPlatform method) get_submitted_jobs_by_name() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.pjmplatform.PJMPlatform method) (autosubmit.platforms.slurmplatform.SlurmPlatform method) get_uncompleted() (autosubmit.job.job_list.JobList method) get_unknown() (autosubmit.job.job_list.JobList method) get_unsubmitted() (autosubmit.job.job_list.JobList method) get_waiting() (autosubmit.job.job_list.JobList method) get_waiting_remote_dependencies() (autosubmit.job.job_list.JobList method)

H

has_children() (autosubmit.job.job.Job method) has_parents() (autosubmit.job.job.Job method)

host (autosubmit.platforms.platform.Platform property) hyperthreading (autosubmit.job.job.Job property) (autosubmit.platforms.platform.Platform property)

I

inc_fail_count() (autosubmit.job.job.Job method) increase_wallclock_by_chunk() (in module autosubmit.job.job_common) inspect() (autosubmit.autosubmit.Autosubmit static method) install() (autosubmit.autosubmit.Autosubmit static method)

is_a_completed_retrial() (autosubmit.job.job.Job static method) is_ancestor() (autosubmit.job.job.Job method) is_over_wallclock() (autosubmit.job.job.Job method) is_parent() (autosubmit.job.job.Job method) is_wrapper_still_running() (autosubmit.job.job_list.JobList method)

J

Job (class in autosubmit.job.job)

JobList (class in autosubmit.job.job_list)

L

last_name_used() (in module autosubmit.database.db_common) load() (autosubmit.job.job_list.JobList method) load_job_list() (autosubmit.autosubmit.Autosubmit static method)

load_wrappers() (autosubmit.job.job_list.JobList method) LocalPlatform (class in autosubmit.platforms.locplatform) long_name (autosubmit.job.job.Job property)

M

manage_wrapper_job() (autosubmit.autosubmit.Autosubmit static method) member (autosubmit.job.job.Job property) memory (autosubmit.job.job.Job property) memory_per_task (autosubmit.job.job.Job property) module autosubmit.autosubmit autosubmit.database.db_common autosubmit.git.autosubmit_git autosubmit.job.job autosubmit.job.job_common autosubmit.job.job_list autosubmit.monitor.monitor autosubmit.platforms.ecplatform autosubmit.platforms.locplatform autosubmit.platforms.pjmplatform autosubmit.platforms.platform autosubmit.platforms.slurmplatform

Monitor (class in autosubmit.monitor.monitor) monitor() (autosubmit.autosubmit.Autosubmit static method) move_file() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.platform.Platform method) MyParser (class in autosubmit.autosubmit)

N

name (autosubmit.job.job.Job property) (autosubmit.platforms.platform.Platform property)

nodes (autosubmit.job.job.Job property) notify_on (autosubmit.job.job.Job property)

O

online_recovery() (autosubmit.autosubmit.Autosubmit static method)

open_conn() (in module autosubmit.database.db_common)

P

packed (autosubmit.job.job.Job property) parameters (autosubmit.job.job_list.JobList property) parents (autosubmit.job.job.Job property) parse_all_jobs_output() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.pjmplatform.PJMPlatform method) (autosubmit.platforms.slurmplatform.SlurmPlatform method) parse_args() (autosubmit.autosubmit.Autosubmit static method) parse_job_list() (autosubmit.platforms.pjmplatform.PJMPlatform method) parse_job_output() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.pjmplatform.PJMPlatform method) (autosubmit.platforms.slurmplatform.SlurmPlatform method) parse_output_number() (in module autosubmit.job.job_common) parse_queue_reason() (autosubmit.platforms.slurmplatform.SlurmPlatform method) partition (autosubmit.job.job.Job property) (autosubmit.platforms.platform.Platform property)

PJMPlatform (class in autosubmit.platforms.pjmplatform) pkl_fix() (autosubmit.autosubmit.Autosubmit static method) platform (autosubmit.job.job.Job property) Platform (class in autosubmit.platforms.platform) prepare_dry_run_if_applicable() (autosubmit.platforms.platform.Platform static method) prepare_run() (autosubmit.autosubmit.Autosubmit static method) prepare_submission() (autosubmit.platforms.platform.Platform method) print_with_status() (autosubmit.job.job_list.JobList method) process_historical_data_iteration() (autosubmit.autosubmit.Autosubmit static method) process_scheduler_parameters() (autosubmit.job.job.Job method) processors (autosubmit.job.job.Job property) processors_per_node (autosubmit.job.job.Job property) project (autosubmit.platforms.platform.Platform property) project_dir (autosubmit.platforms.platform.Platform property) provenance() (autosubmit.autosubmit.Autosubmit static method) put() (autosubmit.platforms.platform.CopyQueue method)

Q

queue (autosubmit.job.job.Job property) (autosubmit.platforms.platform.Platform property)

R

read_file() (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.platform.Platform method) read_header_tailer_script() (autosubmit.job.job.Job method) recover_all_completed_jobs_from_exp_history() (autosubmit.job.job_list.JobList method) recover_job_log() (autosubmit.platforms.platform.Platform method) recover_last_data() (autosubmit.job.job_list.JobList method) recover_last_ready_date() (autosubmit.job.job.Job method) recover_logs() (autosubmit.job.job_list.JobList method) recover_platform_job_logs() (autosubmit.platforms.platform.Platform method) recover_platform_job_logs_wrapper() (in module autosubmit.platforms.platform) recovery() (autosubmit.autosubmit.Autosubmit static method) RecoveryAttempt (class in autosubmit.job.job) RecoveryReport (class in autosubmit.job.job) refresh() (autosubmit.autosubmit.Autosubmit static method) refresh_log_recovery_process() (autosubmit.autosubmit.Autosubmit static method) remove_checkpoint_file() (autosubmit.platforms.platform.Platform method) remove_completed_file() (autosubmit.platforms.platform.Platform method)

remove_multiple_files() (autosubmit.platforms.locplatform.LocalPlatform method) remove_rerun_only_jobs() (autosubmit.job.job_list.JobList method) remove_stat_file() (autosubmit.platforms.platform.Platform method) remove_workers() (autosubmit.platforms.platform.Platform class method) report() (autosubmit.autosubmit.Autosubmit static method) rerun() (autosubmit.job.job_list.JobList method) reservation (autosubmit.platforms.platform.Platform property) reset_logs() (autosubmit.job.job.Job method) restore_connection() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.platform.Platform method) retrials (autosubmit.job.job.Job property) retrieve_logfiles() (autosubmit.job.job.Job method) retrieve_packages() (autosubmit.job.job_list.JobList static method) retrieve_times() (autosubmit.job.job_list.JobList static method) rocrate() (autosubmit.autosubmit.Autosubmit static method) root_dir (autosubmit.platforms.platform.Platform property) run_experiment() (autosubmit.autosubmit.Autosubmit static method)

S

save() (autosubmit.job.job_list.JobList method) save_experiment() (in module autosubmit.database.db_common) save_wrapper_info() (autosubmit.job.job_list.JobList method) save_wrappers() (autosubmit.job.job_list.JobList method) scratch (autosubmit.platforms.platform.Platform property) scratch_free_space (autosubmit.job.job.Job property) script (autosubmit.job.job.Job property) sdate (autosubmit.job.job.Job property) section (autosubmit.job.job.Job property) send_cleanup_signal() (autosubmit.platforms.platform.Platform method) send_command() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) send_cpmip_notification() (autosubmit.job.job.Job method) send_file() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.platform.Platform method) serial_partition (autosubmit.platforms.platform.Platform property) serial_platform (autosubmit.platforms.platform.Platform property) serial_queue (autosubmit.platforms.platform.Platform property) set_ready_date() (autosubmit.job.job.Job method)

set_start_time_from_remote_stat_file() (autosubmit.platforms.ecplatform.EcPlatform method) set_status() (autosubmit.autosubmit.Autosubmit static method) shape (autosubmit.job.job.Job property) signal_handler() (in module autosubmit.autosubmit) signal_handler_create() (in module autosubmit.autosubmit) SlurmPlatform (class in autosubmit.platforms.slurmplatform) sort_by_id() (autosubmit.job.job_list.JobList method) sort_by_name() (autosubmit.job.job_list.JobList method) sort_by_status() (autosubmit.job.job_list.JobList method) sort_by_type() (autosubmit.job.job_list.JobList method) spawn_log_retrieval_process() (autosubmit.platforms.platform.Platform method) split (autosubmit.job.job.Job property) split_by_platform() (autosubmit.job.job_list.JobList method) splits (autosubmit.job.job.Job property) statistics() (autosubmit.autosubmit.Autosubmit static method) Status (class in autosubmit.job.job_common) status_str (autosubmit.job.job.Job property) stop() (autosubmit.autosubmit.Autosubmit static method) submit_error() (autosubmit.platforms.pjmplatform.PJMPlatform method) submit_ready_jobs() (autosubmit.autosubmit.Autosubmit static method) synchronize (autosubmit.job.job.Job property)

T

tasks (autosubmit.job.job.Job property) test_connection() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) testcase() (autosubmit.autosubmit.Autosubmit static method)

threads (autosubmit.job.job.Job property) total_processors (autosubmit.job.job.Job property) type (autosubmit.platforms.platform.Platform property) Type (class in autosubmit.job.job_common)

U

unarchive() (autosubmit.autosubmit.Autosubmit static method) update_cmds() (autosubmit.platforms.ecplatform.EcPlatform method) (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.pjmplatform.PJMPlatform method) (autosubmit.platforms.slurmplatform.SlurmPlatform method) update_content() (autosubmit.job.job.Job method) update_current_parameters() (autosubmit.job.job.Job method) update_experiment_description_version() (in module autosubmit.database.db_common) update_from_file() (autosubmit.job.job_list.JobList method) update_genealogy() (autosubmit.job.job_list.JobList method)

update_job_variables_final_values() (autosubmit.job.job.Job method) update_list() (autosubmit.job.job_list.JobList method) update_local_logs() (autosubmit.job.job.Job method) update_parameters() (autosubmit.job.job.Job method) update_placeholders() (autosubmit.job.job.Job method) update_start_time() (autosubmit.job.job.Job method) update_status() (autosubmit.job.job.Job method) update_submit_time_and_job_id() (autosubmit.job.job.Job method) update_submit_time_on_db() (autosubmit.job.job.Job method) update_version() (autosubmit.autosubmit.Autosubmit static method) user (autosubmit.platforms.platform.Platform property)

V

validate_template (autosubmit.job.job.Job property)

W

wait_for_work() (autosubmit.platforms.platform.Platform method) wallclock (autosubmit.job.job.Job property) wrapper_header() (autosubmit.platforms.slurmplatform.SlurmPlatform method) WrapperJob (class in autosubmit.job.job) write_end_time() (autosubmit.job.job.Job method)

write_jobid() (autosubmit.platforms.locplatform.LocalPlatform method) (autosubmit.platforms.platform.Platform method) write_start_time() (autosubmit.job.job.Job method) write_stats() (autosubmit.job.job.Job method) write_submit_time() (autosubmit.job.job.Job method)

X

x11 (autosubmit.job.job.Job property)

x11_options (autosubmit.job.job.Job property)